fix: projects/ directory should be gitignored — it is local installation config, not shared code (#561)

- Add projects/*.toml to .gitignore
- Remove existing TOML files from git tracking (git rm --cached)
- Add .toml.example templates with placeholder values
- Update BOOTSTRAP.md with new section on project TOML setup
- Update AGENTS.md directory layout description

Existing local installations are unaffected — gitignore only
prevents tracked files from being committed, local copies persist.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

projects/disinto.toml

@@ -1,26 +0,0 @@
-# projects/disinto.toml — disinto develops itself
-#
-# The factory is its own project. Issues filed on johba/disinto
-# are picked up by dev-poll, reviewed by review-poll, groomed by gardener.
-
-name            = "disinto"
-repo            = "johba/disinto"
-repo_root       = "/home/debian/dark-factory"
-primary_branch  = "main"
-
-[ci]
-woodpecker_repo_id = 4
-stale_minutes      = 60
-
-[services]
-containers = []
-
-[matrix]
-room_id = "!ynKSMyWU7OSkbNjR:matrix.allf.in"
-bot_user = "@disinto-factory:matrix.allf.in"
-token_env = "DISINTO_MATRIX_TOKEN"
-
-[monitoring]
-check_prs            = true
-check_dev_agent      = true
-check_pipeline_stall = false

projects/disinto.toml.example

@@ -0,0 +1,26 @@
+# projects/disinto.toml.example — Template for disinto self-management
+#
+# Copy to projects/disinto.toml and fill in box-specific values,
+# or run: disinto init https://codeberg.org/johba/disinto
+
+name            = "disinto"
+repo            = "johba/disinto"
+repo_root       = "/home/YOU/dark-factory"
+primary_branch  = "main"
+
+[ci]
+woodpecker_repo_id = 0
+stale_minutes      = 60
+
+[services]
+containers = []
+
+[matrix]
+room_id   = "!your_room_id:matrix.example.org"
+bot_user  = "@disinto-factory:matrix.example.org"
+token_env = "DISINTO_MATRIX_TOKEN"
+
+[monitoring]
+check_prs            = true
+check_dev_agent      = true
+check_pipeline_stall = false

projects/harb.toml

@@ -1,28 +0,0 @@
-# projects/harb.toml — Project config for johba/harb
-#
-# This file defines project-specific settings for disinto agents.
-#
-# push3-evolution subsystem: fitness_flags field is comma-separated
-# (tools/push3-evolution/seeds/manifest.schema.json, harb#987)
-
-name            = "harb"
-repo            = "johba/harb"
-repo_root       = "/home/debian/harb"
-primary_branch  = "master"
-
-[ci]
-woodpecker_repo_id = 2
-stale_minutes      = 60
-
-[services]
-containers = ["ponder"]
-
-[matrix]
-room_id = "!LvLgiDVUbZKcRYga:matrix.allf.in"
-bot_user = "@harb-factory:matrix.allf.in"
-token_env = "MATRIX_TOKEN"
-
-[monitoring]
-check_prs            = true
-check_dev_agent      = true
-check_pipeline_stall = true

projects/harb.toml.example

@@ -0,0 +1,26 @@
+# projects/harb.toml.example — Template for johba/harb
+#
+# Copy to projects/harb.toml and fill in box-specific values,
+# or run: disinto init https://codeberg.org/johba/harb
+
+name            = "harb"
+repo            = "johba/harb"
+repo_root       = "/home/YOU/harb"
+primary_branch  = "master"
+
+[ci]
+woodpecker_repo_id = 0
+stale_minutes      = 60
+
+[services]
+containers = ["ponder"]
+
+[matrix]
+room_id   = "!your_room_id:matrix.example.org"
+bot_user  = "@harb-factory:matrix.example.org"
+token_env = "MATRIX_TOKEN"
+
+[monitoring]
+check_prs            = true
+check_dev_agent      = true
+check_pipeline_stall = true

projects/versi.toml

@@ -1,21 +0,0 @@
-# projects/versi.toml — Project config for johba/versi
-#
-# This file defines project-specific settings for disinto agents.
-# Drop a new TOML file here to add another project — no code changes needed.
-
-name            = "versi"
-repo            = "johba/versi"
-repo_root       = "/home/admin/versi"
-primary_branch  = "main"
-
-[ci]
-woodpecker_repo_id = 3
-stale_minutes      = 60
-
-[services]
-containers = []
-
-[monitoring]
-check_prs            = true
-check_dev_agent      = true
-check_pipeline_stall = true

projects/versi.toml.example

@@ -0,0 +1,21 @@
+# projects/versi.toml.example — Template for johba/versi
+#
+# Copy to projects/versi.toml and fill in box-specific values,
+# or run: disinto init https://codeberg.org/johba/versi
+
+name            = "versi"
+repo            = "johba/versi"
+repo_root       = "/home/YOU/versi"
+primary_branch  = "main"
+
+[ci]
+woodpecker_repo_id = 0
+stale_minutes      = 60
+
+[services]
+containers = []
+
+[monitoring]
+check_prs            = true
+check_dev_agent      = true
+check_pipeline_stall = true