- Add projects/*.toml to .gitignore
- Remove existing TOML files from git tracking (git rm --cached)
- Add .toml.example templates with placeholder values
- Update BOOTSTRAP.md with new section on project TOML setup
- Update AGENTS.md directory layout description
Existing local installations are unaffected — gitignore only
prevents tracked files from being committed, local copies persist.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>